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USC-OGP 2-DE database
Two-dimensional polyacrylamide gel electrophoresis database
USC-OGP 2-DE database
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Searching in 'USC-OGP 2-DE database' for entry
matching:
P23284
USC-OGP 2-DE database
:
P23284
P23284
General information about the entry
View entry in simple text format
Entry name
PPIB_HUMAN
Primary accession number
P23284
integrated into USC-OGP 2-DE database on
January 17, 2017 (release 1)
2D Annotations were last modified on
January 17, 2017 (version 1)
General Annotations were last modified on
April 5, 2017 (version 2)
Name and origin of the protein
Description
RecName: Full=Peptidyl-prolyl cis-trans isomerase B; Short=PPIase B; EC=5.2.1.8; AltName: Full=CYP-S1; AltName: Full=Cyclophilin B; AltName: Full=Rotamase B; AltName: Full=S-cyclophilin; Short=SCYLP; Flags: Precursor;.
Gene name
Name=PPIB
Synonyms=CYPB
Annotated species
Homo sapiens (Human) [TaxID:
9606
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]
2D GEL CHARACTERIZATION
Author 1., Author 2.
Submitted (Mar-2011) to Current
2D PAGE maps for identified proteins
How to interpret a protein
PLATELET_6-11
{PLATELET 6-11}
Homo sapiens (Human)
map experimental info
PLATELET_6-11
MAP LOCATIONS:
SPOT OGP-0954
:
pI=6.43; Mw=40454
SPOT OGP-1065
:
pI=8.67; Mw=17794
SPOT OGP-1067
:
pI=8.81; Mw=17639
Cross-references
UniProtKB/Swiss-Prot
P23284; PPIB_HUMAN.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
0.0
Entry name
PPIB_HUMAN
Primary accession number
P23284
Secondary accession number(s)
A8K534 Q6IBH5 Q9BVK5
Sequence was last modified on
November 25, 2008 (version 2)
Annotations were last modified on
March 15, 2017 (version 183)
Name and origin of the protein
Description
RecName: Full=Peptidyl-prolyl cis-trans isomerase B; Short=PPIase B; EC=5.2.1.8; AltName: Full=CYP-S1; AltName: Full=Cyclophilin B; AltName: Full=Rotamase B; AltName: Full=S-cyclophilin; Short=SCYLP; Flags: Precursor;
Gene name
Name=PPIB
Synonyms=CYPB
Encoded on
Name=PPIB; Synonyms=CYPB
Keywords
3D-structure
;
Acetylation
;
Complete proteome
;
Direct protein sequencing
;
Disease mutation
;
Dwarfism
;
Endoplasmic reticulum
;
Glycoprotein
;
Isomerase
;
Osteogenesis imperfecta
;
Polymorphism
;
Reference proteome
;
Rotamase
;
Signal
.
Copyright
Copyrighted by the UniProt Consortium, see
http://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
M63573; AAA36601.1
; -; mRNA
EMBL
AK291149; BAF83838.1
; -; mRNA
EMBL
CR456829; CAG33110.1
; -; mRNA
EMBL
AY962310; AAX44050.1
; -; Genomic_DNA
EMBL
AC100840; -
; NOT_ANNOTATED_CDS; Genomic_DNA
EMBL
CH471082; EAW77669.1
; -; Genomic_DNA
EMBL
BC001125; AAH01125.1
; -; mRNA
EMBL
BC008848; AAH08848.1
; -; mRNA
EMBL
BC020800; AAH20800.1
; -; mRNA
EMBL
BC032138; AAH32138.1
; -; mRNA
EMBL
M60857; AAA52150.1
; ALT_INIT; mRNA
EMBL
M60457; AAA35733.1
; -; mRNA
CCDS
CCDS10191.1; -
; .
PIR
A39118; CSHUB
; .
RefSeq
NP_000933.1; NM_000942.4
; .
UniGene
Hs.434937; -
; .
PDB
1CYN; X-ray
; 1.85 A; A=39-216
PDB
3ICH; X-ray
; 1.20 A; A=34-216
PDB
3ICI; X-ray
; 1.70 A; A/B=34-216
PDBsum
1CYN; -
; .
PDBsum
3ICH; -
; .
PDBsum
3ICI; -
; .
ProteinModelPortal
P23284; -
; .
SMR
P23284; -
; .
BioGrid
111475; 92
; .
IntAct
P23284; 32
; .
MINT
MINT-1142578; -
; .
STRING
9606.ENSP00000300026; -
; .
BindingDB
P23284; -
; .
ChEMBL
CHEMBL2075; -
; .
DrugBank
DB00172; L-Proline
; .
iPTMnet
P23284; -
; .
PhosphoSitePlus
P23284; -
; .
SwissPalm
P23284; -
; .
BioMuta
PPIB; -
; .
DMDM
215273869; -
; .
OGP
P23284; -
; .
REPRODUCTION-2DPAGE
IPI00646304; -
; .
SWISS-2DPAGE
P23284; -
; .
EPD
P23284; -
; .
MaxQB
P23284; -
; .
PaxDb
P23284; -
; .
PeptideAtlas
P23284; -
; .
PRIDE
P23284; -
; .
TopDownProteomics
P23284; -
; .
DNASU
5479; -
; .
Ensembl
ENST00000300026; ENSP00000300026
; ENSG00000166794; .
GeneID
5479; -
; .
KEGG
hsa:5479; -
; .
UCSC
uc002and.4; human
; .
CTD
5479; -
; .
DisGeNET
5479; -
; .
GeneCards
PPIB; -
; .
HGNC
HGNC:9255; PPIB
; .
HPA
CAB011487; -
; .
HPA
HPA012720; -
; .
MalaCards
PPIB; -
; .
MIM
123841; gene
; .
MIM
259440; phenotype
; .
neXtProt
NX_P23284; -
; .
OpenTargets
ENSG00000166794; -
; .
Orphanet
216804; Osteogenesis imperfecta type 2
; .
Orphanet
216812; Osteogenesis imperfecta type 3
; .
Orphanet
216820; Osteogenesis imperfecta type 4
; .
PharmGKB
PA33580; -
; .
eggNOG
KOG0880; Eukaryota
; .
eggNOG
ENOG410Z0G4; LUCA
; .
GeneTree
ENSGT00760000119072; -
; .
HOGENOM
HOG000065981; -
; .
HOVERGEN
HBG001065; -
; .
InParanoid
P23284; -
; .
KO
K03768; -
; .
OMA
SPAYANE; -
; .
OrthoDB
EOG091G0BGL; -
; .
PhylomeDB
P23284; -
; .
TreeFam
TF354259; -
; .
BRENDA
5.2.1.8; 2681
; .
Reactome
R-HSA-1650814; Collagen biosynthesis and modifying enzymes
; .
ChiTaRS
PPIB; human
; .
EvolutionaryTrace
P23284; -
; .
GeneWiki
PPIB; -
; .
GenomeRNAi
5479; -
; .
PRO
PR:P23284; -
; .
Proteomes
UP000005640; Chromosome 15
; .
Bgee
ENSG00000166794; -
; .
CleanEx
HS_PPIB; -
; .
Genevisible
P23284; HS
; .
GO
GO:0005783; C:endoplasmic reticulum
; IDA:UniProtKB; .
GO
GO:0034663; C:endoplasmic reticulum chaperone complex
; IEA:Ensembl; .
GO
GO:0005788; C:endoplasmic reticulum lumen
; NAS:UniProtKB; .
GO
GO:0070062; C:extracellular exosome
; IDA:UniProtKB; .
GO
GO:0005925; C:focal adhesion
; IDA:UniProtKB; .
GO
GO:0032991; C:macromolecular complex
; ISS:UniProtKB; .
GO
GO:0042470; C:melanosome
; IEA:UniProtKB-SubCell; .
GO
GO:0016020; C:membrane
; IDA:UniProtKB; .
GO
GO:0005634; C:nucleus
; IDA:UniProtKB; .
GO
GO:0048471; C:perinuclear region of cytoplasm
; IDA:AgBase; .
GO
GO:0005790; C:smooth endoplasmic reticulum
; IEA:Ensembl; .
GO
GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity
; ISS:UniProtKB; .
GO
GO:0032403; F:protein complex binding
; ISS:UniProtKB; .
GO
GO:0003723; F:RNA binding
; IDA:UniProtKB; .
GO
GO:0070063; F:RNA polymerase binding
; IPI:AgBase; .
GO
GO:0051082; F:unfolded protein binding
; TAS:ProtInc; .
GO
GO:0060348; P:bone development
; IMP:UniProtKB; .
GO
GO:0061077; P:chaperone-mediated protein folding
; IDA:UniProtKB; .
GO
GO:0044829; P:positive regulation by host of viral genome replication
; IMP:AgBase; .
GO
GO:0044794; P:positive regulation by host of viral process
; IMP:AgBase; .
GO
GO:0040018; P:positive regulation of multicellular organism growth
; IMP:UniProtKB; .
GO
GO:0000413; P:protein peptidyl-prolyl isomerization
; ISS:UniProtKB; .
GO
GO:0050821; P:protein stabilization
; IMP:UniProtKB; .
Gene3D
2.40.100.10; -
; 1; .
InterPro
IPR029000; Cyclophilin-like_dom
; .
InterPro
IPR024936; Cyclophilin-type_PPIase
; .
InterPro
IPR020892; Cyclophilin-type_PPIase_CS
; .
InterPro
IPR002130; Cyclophilin-type_PPIase_dom
; .
PANTHER
PTHR11071; PTHR11071
; 1; .
Pfam
PF00160; Pro_isomerase
; 1; .
PRINTS
PR00153; CSAPPISMRASE
; .
SUPFAM
SSF50891; SSF50891
; 1; .
PROSITE
PS00170; CSA_PPIASE_1
; 1; .
PROSITE
PS50072; CSA_PPIASE_2
; 1; .
Gateways to other related servers
The World-2DPAGE Constellation
- Entry point to the world-wide 2-DPAGE resources.
World-2DPAGE Repository
- A public repository for gel-based proteomics data linked to protein identification published in the literature.
World-2DPAGE Portal
- A dynamic portal to query simultaneously world-wide gel-based proteomics databases.
SWISS-2DPAGE
- The Geneva Two-dimensional polyacrylamide gel electrophoresis database.
ExPASy
- The resources web server of the
Swiss Institute of Bioinformatics
Database constructed and maintained by
Angel Garcia
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
ExPASy web server
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